STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VMCG_09821Ubiquitin carboxyl-terminal hydrolase. (785 aa)    
Predicted Functional Partners:
VMCG_09577
Uncharacterized protein.
    
 0.980
VMCG_03589
Uncharacterized protein.
     
 0.979
VMCG_09496
AN1-type domain-containing protein.
    
 0.945
VMCG_09159
Ubiquitin-like domain-containing protein.
    
 0.945
VMCG_03291
BZIP domain-containing protein.
    
 0.945
VMCG_02669
Ubiquitin-like domain-containing protein.
    
 0.945
VMCG_08743
Uncharacterized protein.
    
 0.900
VMCG_05770
Ubiquitin-like domain-containing protein.
    
 0.900
VMCG_04479
AN1-type domain-containing protein.
    
 0.900
VMCG_07767
Uncharacterized protein.
    
 0.846
Your Current Organism:
Valsa malicola
NCBI taxonomy Id: 356882
Other names: V. malicola
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.