STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VMCG_09322Fe2OG dioxygenase domain-containing protein. (490 aa)    
Predicted Functional Partners:
VMCG_04222
Tryptophan synthase.
    
  0.812
VMCG_07647
Uncharacterized protein.
    
 0.696
VMCG_07528
Uncharacterized protein.
   
 0.533
VMCG_07839
Hcy-binding domain-containing protein.
    
 0.463
VMCG_05871
Uncharacterized protein.
   
 0.444
VMCG_10195
Uncharacterized protein.
   
  0.424
VMCG_09859
Aldo_ket_red domain-containing protein.
   
  0.424
VMCG_10106
Aldo_ket_red domain-containing protein.
   
  0.424
VMCG_09769
Zn(2)-C6 fungal-type domain-containing protein.
   
  0.424
VMCG_09779
Aldo_ket_red domain-containing protein.
   
  0.424
Your Current Organism:
Valsa malicola
NCBI taxonomy Id: 356882
Other names: V. malicola
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.