STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VMCG_04319Uncharacterized protein. (707 aa)    
Predicted Functional Partners:
VMCG_08452
Uncharacterized protein.
   
 
 0.960
VMCG_03891
RRM domain-containing protein.
    
 
 0.959
VMCG_03475
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.951
VMCG_03093
Uncharacterized protein.
    
 
 0.883
VMCG_00188
Nuclear cap-binding protein subunit 2.
   
 
 0.870
VMCG_10837
Uncharacterized protein.
   
 
 0.782
VMCG_04306
CID domain-containing protein.
   
 
 0.730
VMCG_07630
Uncharacterized protein.
   
 
 0.722
VMCG_03755
Uncharacterized protein.
   
 
 0.722
VMCG_07570
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.706
Your Current Organism:
Valsa malicola
NCBI taxonomy Id: 356882
Other names: V. malicola
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