STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VMCG_03528Uncharacterized protein. (1281 aa)    
Predicted Functional Partners:
VMCG_06943
HRDC domain-containing protein.
   
 0.995
VMCG_04613
3'-5' exonuclease domain-containing protein.
   
 0.995
VMCG_00362
3'-5' exonuclease domain-containing protein.
   
 0.995
VMCG_04447
BSD domain-containing protein.
    
 0.986
VMCG_00301
Uncharacterized protein.
    
 0.982
VMCG_04465
Helicase ATP-binding domain-containing protein.
    
 0.977
VMCG_00965
ERCC4 domain-containing protein.
   
 0.964
VMCG_06912
XPA_C domain-containing protein.
    
 0.963
VMCG_07354
General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.
    
 0.951
VMCG_00001
Uncharacterized protein.
    
 0.947
Your Current Organism:
Valsa malicola
NCBI taxonomy Id: 356882
Other names: V. malicola
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