Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
VMCG_00001 | VMCG_00301 | A0A423XAC4 | A0A423X8P5 | Uncharacterized protein. | Uncharacterized protein. | 0.797 |
VMCG_00001 | VMCG_00362 | A0A423XAC4 | A0A423X8E4 | Uncharacterized protein. | 3'-5' exonuclease domain-containing protein. | 0.514 |
VMCG_00001 | VMCG_00965 | A0A423XAC4 | A0A423X675 | Uncharacterized protein. | ERCC4 domain-containing protein. | 0.619 |
VMCG_00001 | VMCG_03528 | A0A423XAC4 | A0A423WWV5 | Uncharacterized protein. | Uncharacterized protein. | 0.947 |
VMCG_00001 | VMCG_04447 | A0A423XAC4 | A0A423WSX2 | Uncharacterized protein. | BSD domain-containing protein. | 0.721 |
VMCG_00001 | VMCG_04465 | A0A423XAC4 | A0A423WSK3 | Uncharacterized protein. | Helicase ATP-binding domain-containing protein. | 0.819 |
VMCG_00001 | VMCG_04613 | A0A423XAC4 | A0A423WRV0 | Uncharacterized protein. | 3'-5' exonuclease domain-containing protein. | 0.514 |
VMCG_00001 | VMCG_06912 | A0A423XAC4 | A0A423W239 | Uncharacterized protein. | XPA_C domain-containing protein. | 0.866 |
VMCG_00001 | VMCG_06943 | A0A423XAC4 | A0A423W266 | Uncharacterized protein. | HRDC domain-containing protein. | 0.514 |
VMCG_00001 | VMCG_07354 | A0A423XAC4 | A0A423W2Z5 | Uncharacterized protein. | General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. | 0.698 |
VMCG_00301 | VMCG_00001 | A0A423X8P5 | A0A423XAC4 | Uncharacterized protein. | Uncharacterized protein. | 0.797 |
VMCG_00301 | VMCG_00965 | A0A423X8P5 | A0A423X675 | Uncharacterized protein. | ERCC4 domain-containing protein. | 0.801 |
VMCG_00301 | VMCG_03528 | A0A423X8P5 | A0A423WWV5 | Uncharacterized protein. | Uncharacterized protein. | 0.982 |
VMCG_00301 | VMCG_04447 | A0A423X8P5 | A0A423WSX2 | Uncharacterized protein. | BSD domain-containing protein. | 0.999 |
VMCG_00301 | VMCG_04465 | A0A423X8P5 | A0A423WSK3 | Uncharacterized protein. | Helicase ATP-binding domain-containing protein. | 0.999 |
VMCG_00301 | VMCG_06912 | A0A423X8P5 | A0A423W239 | Uncharacterized protein. | XPA_C domain-containing protein. | 0.979 |
VMCG_00301 | VMCG_07354 | A0A423X8P5 | A0A423W2Z5 | Uncharacterized protein. | General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. | 0.999 |
VMCG_00362 | VMCG_00001 | A0A423X8E4 | A0A423XAC4 | 3'-5' exonuclease domain-containing protein. | Uncharacterized protein. | 0.514 |
VMCG_00362 | VMCG_00965 | A0A423X8E4 | A0A423X675 | 3'-5' exonuclease domain-containing protein. | ERCC4 domain-containing protein. | 0.995 |
VMCG_00362 | VMCG_03528 | A0A423X8E4 | A0A423WWV5 | 3'-5' exonuclease domain-containing protein. | Uncharacterized protein. | 0.995 |
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