STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VMCG_03268Uncharacterized protein. (1074 aa)    
Predicted Functional Partners:
VMCG_01595
ERCC4 domain-containing protein.
    
 0.611
VMCG_06851
Uncharacterized protein.
   
  0.597
VMCG_06850
Uncharacterized protein.
   
  0.597
VMCG_03616
Uncharacterized protein.
   
  0.597
VMCG_01416
dUTPase domain-containing protein.
   
  0.597
VMCG_01461
Uncharacterized protein.
    
 0.595
VMCG_09583
Uncharacterized protein.
    
 0.577
VMCG_07898
Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.
    
  0.576
VMCG_06219
MPN domain-containing protein.
    
  0.565
VMCG_00965
ERCC4 domain-containing protein.
   
 0.560
Your Current Organism:
Valsa malicola
NCBI taxonomy Id: 356882
Other names: V. malicola
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