STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMG51910.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (65 aa)    
Predicted Functional Partners:
AMG51911.1
Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.750
AMG51912.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.641
AMG51906.1
Copper resistance protein CopB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.584
AMG52034.1
Heptose kinase; Catalyzes the phosphorylation of heptose(I) of the outer membrane lipopolysaccharide core; Belongs to the protein kinase superfamily. KdkA/rfaP family.
  
     0.532
PcoA
Copper oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.504
AMG51902.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.478
AMG52035.1
Glucosyltransferase I RfaG; Catalyzes the addition of the first glucose residue to the LPS core; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.478
AMG51918.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.454
AMG55371.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.433
AMG51913.1
Cation transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.429
Your Current Organism:
Citrobacter amalonaticus
NCBI taxonomy Id: 35703
Other names: ATCC 25405, C. amalonaticus, CCUG 4860, CECT 863, CIP 82.89, Citrobacter intermedius biogroup a, DSM 4593, LMG 7873, LMG:7873, Levinea amalonatica, NCTC 10805
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