STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMG52346.1Phage capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (279 aa)    
Predicted Functional Partners:
AMG52347.1
Major capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.990
AMG52348.1
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.953
AMG52350.1
Head completion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.936
AMG52337.1
Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.924
AMG52345.1
Terminase; gpP; P protein; capsid packaging; P protein is probably the ATPase subunit of the terminase complex, which directs cos cleavage of closed monomeric dsDNA circles into linear genomes with 19 nt cohesive ssDNA ends; Q, P and M proteins are needed to package DNA into capsid proheads and conversion into mature capsids; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.896
AMG52344.1
Phage portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.890
AMG53766.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.871
AMG55227.1
Exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.859
AMG52359.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.846
AMG55209.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.842
Your Current Organism:
Citrobacter amalonaticus
NCBI taxonomy Id: 35703
Other names: ATCC 25405, C. amalonaticus, CCUG 4860, CECT 863, CIP 82.89, Citrobacter intermedius biogroup a, DSM 4593, LMG 7873, LMG:7873, Levinea amalonatica, NCTC 10805
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