Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AMG52728.1 | MiaE | AL524_06325 | AL524_06320 | Topoisomerase II; Derived by automated computational analysis using gene prediction method: Protein Homology. | tRNA 2-methylthio-N6-isopentenyl adenosine(37) hydroxylase MiaE; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.594 |
AMG52728.1 | rraB | AL524_06325 | AL524_06315 | Topoisomerase II; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNase E inhibitor protein; Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome. | 0.480 |
MiaE | AMG52728.1 | AL524_06320 | AL524_06325 | tRNA 2-methylthio-N6-isopentenyl adenosine(37) hydroxylase MiaE; Derived by automated computational analysis using gene prediction method: Protein Homology. | Topoisomerase II; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.594 |
MiaE | rraB | AL524_06320 | AL524_06315 | tRNA 2-methylthio-N6-isopentenyl adenosine(37) hydroxylase MiaE; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNase E inhibitor protein; Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome. | 0.874 |
rraB | AMG52728.1 | AL524_06315 | AL524_06325 | RNase E inhibitor protein; Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome. | Topoisomerase II; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.480 |
rraB | MiaE | AL524_06315 | AL524_06320 | RNase E inhibitor protein; Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome. | tRNA 2-methylthio-N6-isopentenyl adenosine(37) hydroxylase MiaE; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.874 |