STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMG53152.1Lipoprotein/autotransporter domain-containing protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1514 aa)    
Predicted Functional Partners:
AMG53240.1
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.736
AMG54753.1
Host specificity protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.599
AMG52593.1
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.479
AMG56121.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.462
AMG55163.1
Hemolysin activator protein precursor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.446
AMG56098.1
Replication protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.438
wecD
TDP-fucosamine acetyltransferase; Catalyzes the acetylation of dTDP-fucosamine (dTDP-4-amino- 4,6-dideoxy-D-galactose) to dTDP-Fuc4NAc, which is utilized in the biosynthesis of the enterobacterial common antigen (ECA). Belongs to the WecD family.
  
     0.437
wecF
4-alpha-L-fucosyltransferase; Catalyzes the synthesis of Und-PP-GlcNAc-ManNAcA-Fuc4NAc (Lipid III), the third lipid-linked intermediate involved in ECA synthesis; Belongs to the glycosyltransferase 56 family.
  
     0.421
AMG55175.1
Autotransporter outer membrane beta-barrel domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
0.404
Your Current Organism:
Citrobacter amalonaticus
NCBI taxonomy Id: 35703
Other names: ATCC 25405, C. amalonaticus, CCUG 4860, CECT 863, CIP 82.89, Citrobacter intermedius biogroup a, DSM 4593, LMG 7873, LMG:7873, Levinea amalonatica, NCTC 10805
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