Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AMG53446.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (203 aa)    
Predicted Functional Partners:
AMG54602.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.675
AMG54480.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.602
AMG52771.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.592
AMG53444.1
Dienelactone hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.562
AMG54482.1
Tetrathionate reductase subunit C; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.540
AL524_04315
Aminoimidazole riboside kinase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.531
AMG54278.1
Virulence effector SrfC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.523
AMG52578.1
Dimethyl sulfoxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.500
DagR
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.492
AMG52505.1
Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.431
Your Current Organism:
Citrobacter amalonaticus
NCBI taxonomy Id: 35703
Other names: ATCC 25405, C. amalonaticus, CCUG 4860, CECT 863, CIP 82.89, Citrobacter intermedius biogroup a, DSM 4593, LMG 7873, LMG:7873, Levinea amalonatica, NCTC 10805
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