STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMG53779.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (399 aa)    
Predicted Functional Partners:
AMG53778.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.944
AMG53777.1
Translation initiation factor IF-2; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.940
AMG53780.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.927
AMG53772.1
Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.921
AMG53775.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.833
AMG53773.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.828
AMG53139.1
Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.803
AMG53760.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.786
AMG53442.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 
 0.765
AMG54759.1
Phage tail tape measure protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.750
Your Current Organism:
Citrobacter amalonaticus
NCBI taxonomy Id: 35703
Other names: ATCC 25405, C. amalonaticus, CCUG 4860, CECT 863, CIP 82.89, Citrobacter intermedius biogroup a, DSM 4593, LMG 7873, LMG:7873, Levinea amalonatica, NCTC 10805
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.