STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMG54187.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (301 aa)    
Predicted Functional Partners:
AMG54184.1
Glycosyl hydrolase family 65; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.655
AMG54182.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.651
pgmB
Beta-phosphoglucomutase; Catalyzes the interconversion of beta-D-glucose 6-phosphate to beta-D-glucose 1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.621
AMG54186.1
Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
       0.584
AMG54181.1
Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.581
AMG54183.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.571
AMG54179.1
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.550
AMG54180.1
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.539
AMG54178.1
Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.522
AMG54177.1
Sugar phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.481
Your Current Organism:
Citrobacter amalonaticus
NCBI taxonomy Id: 35703
Other names: ATCC 25405, C. amalonaticus, CCUG 4860, CECT 863, CIP 82.89, Citrobacter intermedius biogroup a, DSM 4593, LMG 7873, LMG:7873, Levinea amalonatica, NCTC 10805
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