STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0B7NC47ASXH domain-containing protein. (729 aa)    
Predicted Functional Partners:
A0A0B7NHM9
Uncharacterized protein.
    
 0.771
A0A0B7NSG8
Uncharacterized protein.
    
 0.768
A0A0B7NGU2
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
 0.750
A0A0B7N7A3
Small nuclear ribonucleoprotein Sm D2.
    
 0.738
A0A0B7MXF1
DNA polymerase.
   
 0.737
A0A0B7N0C4
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.736
A0A0B7MVH5
Sm domain-containing protein.
    
  0.731
A0A0B7NIF8
ERCC4 domain-containing protein.
    
 0.718
A0A0B7NP96
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 0.692
A0A0B7N0N4
Small nuclear ribonucleoprotein G.
    
  0.657
Your Current Organism:
Parasitella parasitica
NCBI taxonomy Id: 35722
Other names: P. parasitica, Parasitella simplex
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