STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0B7NIK9Uncharacterized protein. (503 aa)    
Predicted Functional Partners:
A0A0B7NIF2
Sm domain-containing protein.
   
 0.922
A0A0B7NWQ4
U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
   
 0.918
A0A0B7NCC7
Uncharacterized protein.
   
 0.917
A0A0B7NEM3
Sm domain-containing protein.
   
 0.917
A0A0B7MTD0
U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.
   
 0.913
A0A0B7MRF6
Uncharacterized protein.
    
 0.883
A0A0B7NHP2
Small nuclear ribonucleoprotein Sm D3.
   
 0.881
A0A0B7N7A3
Small nuclear ribonucleoprotein Sm D2.
   
 0.869
A0A0B7N0C4
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.858
A0A0B7MVH5
Sm domain-containing protein.
   
 0.848
Your Current Organism:
Parasitella parasitica
NCBI taxonomy Id: 35722
Other names: P. parasitica, Parasitella simplex
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