Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
aas | acpP | OTBS_1706 | OTBS_0382 | spoT-like ppGpp hydrolase. | Acyl carrier protein. | 0.999 |
aas | ank1D1 | OTBS_1706 | OTBS_0071 | spoT-like ppGpp hydrolase. | Conjugative transfer protein. | 0.852 |
aas | fabD | OTBS_1706 | OTBS_0743 | spoT-like ppGpp hydrolase. | Acyl-carrier-protein S-malonyltransferase. | 0.838 |
aas | fabF | OTBS_1706 | OTBS_0383 | spoT-like ppGpp hydrolase. | 3-oxoacyl-[acyl carrier protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. | 0.856 |
aas | fabG | OTBS_1706 | OTBS_0381 | spoT-like ppGpp hydrolase. | 3-oxoacyl reductase. | 0.903 |
aas | fabI | OTBS_1706 | OTBS_0706 | spoT-like ppGpp hydrolase. | Enoyl-[acyl carrier protein] reductase. | 0.808 |
aas | fabZ | OTBS_1706 | OTBS_0404 | spoT-like ppGpp hydrolase. | (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase. | 0.824 |
aas | fdxB | OTBS_1706 | OTBS_1101 | spoT-like ppGpp hydrolase. | Transposase and inactivated derivative. | 0.680 |
aas | polA | OTBS_1706 | OTBS_1022 | spoT-like ppGpp hydrolase. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.542 |
aas | recA | OTBS_1706 | OTBS_0380 | spoT-like ppGpp hydrolase. | Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.769 |
acpP | aas | OTBS_0382 | OTBS_1706 | Acyl carrier protein. | spoT-like ppGpp hydrolase. | 0.999 |
acpP | ank1D1 | OTBS_0382 | OTBS_0071 | Acyl carrier protein. | Conjugative transfer protein. | 0.840 |
acpP | fabD | OTBS_0382 | OTBS_0743 | Acyl carrier protein. | Acyl-carrier-protein S-malonyltransferase. | 0.999 |
acpP | fabF | OTBS_0382 | OTBS_0383 | Acyl carrier protein. | 3-oxoacyl-[acyl carrier protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. | 0.999 |
acpP | fabG | OTBS_0382 | OTBS_0381 | Acyl carrier protein. | 3-oxoacyl reductase. | 0.871 |
acpP | fabI | OTBS_0382 | OTBS_0706 | Acyl carrier protein. | Enoyl-[acyl carrier protein] reductase. | 0.923 |
acpP | fabZ | OTBS_0382 | OTBS_0404 | Acyl carrier protein. | (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase. | 0.999 |
acpP | fdxB | OTBS_0382 | OTBS_1101 | Acyl carrier protein. | Transposase and inactivated derivative. | 0.788 |
acpP | polA | OTBS_0382 | OTBS_1022 | Acyl carrier protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.940 |
acpP | recA | OTBS_0382 | OTBS_0380 | Acyl carrier protein. | Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.952 |
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