Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| OTBS_0923 | ccmA | OTBS_0923 | OTBS_1392 | Hypothetical protein; Possible subunit of a heme lyase. | Aconitate hydratase; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. | 0.471 |
| OTBS_0923 | ccmC | OTBS_0923 | OTBS_1577 | Hypothetical protein; Possible subunit of a heme lyase. | Heme exporter protein C; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family. | 0.700 |
| OTBS_0923 | ccmE | OTBS_0923 | OTBS_0500 | Hypothetical protein; Possible subunit of a heme lyase. | Cytochrome c-type biogenesis protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family. | 0.743 |
| OTBS_0923 | ccmF | OTBS_0923 | OTBS_1486 | Hypothetical protein; Possible subunit of a heme lyase. | Transposase and inactivated derivative. | 0.867 |
| OTBS_1395 | ccmA | OTBS_1395 | OTBS_1392 | Conserved hypothetical protein. | Aconitate hydratase; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. | 0.473 |
| OTBS_1395 | ccmB | OTBS_1395 | OTBS_1393 | Conserved hypothetical protein. | Heme exporter protein B. | 0.473 |
| ccmA | OTBS_0923 | OTBS_1392 | OTBS_0923 | Aconitate hydratase; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. | Hypothetical protein; Possible subunit of a heme lyase. | 0.471 |
| ccmA | OTBS_1395 | OTBS_1392 | OTBS_1395 | Aconitate hydratase; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. | Conserved hypothetical protein. | 0.473 |
| ccmA | ccmB | OTBS_1392 | OTBS_1393 | Aconitate hydratase; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. | Heme exporter protein B. | 0.999 |
| ccmA | ccmC | OTBS_1392 | OTBS_1577 | Aconitate hydratase; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. | Heme exporter protein C; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family. | 0.999 |
| ccmA | ccmE | OTBS_1392 | OTBS_0500 | Aconitate hydratase; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. | Cytochrome c-type biogenesis protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family. | 0.876 |
| ccmA | ccmF | OTBS_1392 | OTBS_1486 | Aconitate hydratase; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. | Transposase and inactivated derivative. | 0.776 |
| ccmA | hemH | OTBS_1392 | OTBS_1009 | Aconitate hydratase; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. | Putative ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. | 0.568 |
| ccmA | znuC | OTBS_1392 | OTBS_1910 | Aconitate hydratase; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. | Zinc ABC transporter ATP-binding protein; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family. | 0.511 |
| ccmB | OTBS_1395 | OTBS_1393 | OTBS_1395 | Heme exporter protein B. | Conserved hypothetical protein. | 0.473 |
| ccmB | ccmA | OTBS_1393 | OTBS_1392 | Heme exporter protein B. | Aconitate hydratase; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. | 0.999 |
| ccmB | ccmC | OTBS_1393 | OTBS_1577 | Heme exporter protein B. | Heme exporter protein C; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family. | 0.995 |
| ccmB | ccmE | OTBS_1393 | OTBS_0500 | Heme exporter protein B. | Cytochrome c-type biogenesis protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family. | 0.867 |
| ccmB | ccmF | OTBS_1393 | OTBS_1486 | Heme exporter protein B. | Transposase and inactivated derivative. | 0.658 |
| ccmC | OTBS_0923 | OTBS_1577 | OTBS_0923 | Heme exporter protein C; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family. | Hypothetical protein; Possible subunit of a heme lyase. | 0.700 |
page 1 of 2