STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
traF-4Conjugative transfer protein. (234 aa)    
Predicted Functional Partners:
tdpX1
Thioredoxin peroxidase 1.
  
 0.976
lpdA
Dihydrolipoamide dehydrogenase.
  
 0.974
nrdA
Ribonucleoside-diphosphate reductase alpha chain; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
  
 
 0.911
ank1D1
Conjugative transfer protein.
   
 0.795
traU
Conjugative transfer protein.
 
     0.774
sco2
Putative electron transport protein.
  
 
 0.773
traN-2
Conjugative pilus assembly protein.
 
     0.771
traN-3
Conjugative pilus assembly protein.
 
     0.771
traN-4
Conjugative pilus assembly protein.
 
     0.771
traN-5
Conjugative pilus assembly protein.
 
     0.771
Your Current Organism:
Orientia tsutsugamushi
NCBI taxonomy Id: 357244
Other names: O. tsutsugamushi str. Boryong, Orientia tsutsugamushi Boryong, Orientia tsutsugamushi str. Boryong, Orientia tsutsugamushi strain Boryong
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.