Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
tchA-20 | tchB-18 | OTBS_1675 | OTBS_1673 | Conserved hypothetical protein. | Conjugative pilus assembly protein. | 0.773 |
tchA-20 | traE-10 | OTBS_1675 | OTBS_1674 | Conserved hypothetical protein. | Conjugative transfer protein. | 0.776 |
tchB-18 | tchA-20 | OTBS_1673 | OTBS_1675 | Conjugative pilus assembly protein. | Conserved hypothetical protein. | 0.773 |
tchB-18 | traE-10 | OTBS_1673 | OTBS_1674 | Conjugative pilus assembly protein. | Conjugative transfer protein. | 0.776 |
traD_F-6 | traE-10 | OTBS_1447 | OTBS_1674 | Conjugative transfer protein. | Conjugative transfer protein. | 0.510 |
traD_F-6 | traN | OTBS_1447 | OTBS_0108 | Conjugative transfer protein. | Transposase and inactivated derivative. | 0.583 |
traD_F-6 | traN-2 | OTBS_1447 | OTBS_0232 | Conjugative transfer protein. | Conjugative pilus assembly protein. | 0.618 |
traD_F-6 | traN-3 | OTBS_1447 | OTBS_0636 | Conjugative transfer protein. | Conjugative pilus assembly protein. | 0.618 |
traD_F-6 | traN-4 | OTBS_1447 | OTBS_0878 | Conjugative transfer protein. | Conjugative pilus assembly protein. | 0.618 |
traD_F-6 | traN-5 | OTBS_1447 | OTBS_1085 | Conjugative transfer protein. | Conjugative pilus assembly protein. | 0.618 |
traD_F-6 | traN-6 | OTBS_1447 | OTBS_1291 | Conjugative transfer protein. | Conjugative pilus assembly protein. | 0.619 |
traD_F-6 | traN-7 | OTBS_1447 | OTBS_1477 | Conjugative transfer protein. | Conjugative pilus assembly protein. | 0.619 |
traE-10 | tchA-20 | OTBS_1674 | OTBS_1675 | Conjugative transfer protein. | Conserved hypothetical protein. | 0.776 |
traE-10 | tchB-18 | OTBS_1674 | OTBS_1673 | Conjugative transfer protein. | Conjugative pilus assembly protein. | 0.776 |
traE-10 | traD_F-6 | OTBS_1674 | OTBS_1447 | Conjugative transfer protein. | Conjugative transfer protein. | 0.510 |
traE-10 | traN | OTBS_1674 | OTBS_0108 | Conjugative transfer protein. | Transposase and inactivated derivative. | 0.510 |
traE-10 | traN-2 | OTBS_1674 | OTBS_0232 | Conjugative transfer protein. | Conjugative pilus assembly protein. | 0.510 |
traE-10 | traN-3 | OTBS_1674 | OTBS_0636 | Conjugative transfer protein. | Conjugative pilus assembly protein. | 0.510 |
traE-10 | traN-4 | OTBS_1674 | OTBS_0878 | Conjugative transfer protein. | Conjugative pilus assembly protein. | 0.510 |
traE-10 | traN-5 | OTBS_1674 | OTBS_1085 | Conjugative transfer protein. | Conjugative pilus assembly protein. | 0.510 |
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