STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRO05893.1Hypothetical protein. (527 aa)    
Predicted Functional Partners:
KRO05909.1
Fructuronate reductase.
 
  
  0.965
uxaC
Glucuronate isomerase.
 
  
 0.944
KRO05891.1
NRPS condensation (elongation) domain-containing protein.
 
     0.862
uxaC-2
Glucuronate isomerase.
    
 0.855
KRO05894.1
Na+ xyloside symporter related transporter.
 
     0.775
KRO05906.1
2-hydroxyacid dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
     0.733
KRO05190.1
O-glycosyl hydrolase; Belongs to the glycosyl hydrolase 30 family.
  
     0.664
KRO05895.1
Catabolite control protein A.
 
     0.656
KRO05899.1
Transcriptional regulator.
 
     0.645
KRO07221.1
Threonine dehydrogenase related Zn-dependent dehydrogenase.
    
  0.589
Your Current Organism:
Lactobacillus parabrevis
NCBI taxonomy Id: 357278
Other names: ATCC 53295, L. parabrevis, LMG 11984, LMG:11984, Lactobacillus parabrevis Vancanneyt et al. 2006
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.