Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KRO04524.1 | KRO07079.1 | IV61_GL001999 | IV61_GL000727 | Hypothetical protein. | ComX; Belongs to the sigma-70 factor family. | 0.610 |
KRO05712.1 | KRO07079.1 | IV61_GL001001 | IV61_GL000727 | Hypothetical protein. | ComX; Belongs to the sigma-70 factor family. | 0.659 |
KRO06356.1 | KRO07079.1 | IV61_GL000257 | IV61_GL000727 | Serine threonine kinase. | ComX; Belongs to the sigma-70 factor family. | 0.771 |
KRO06356.1 | topA | IV61_GL000257 | IV61_GL002174 | Serine threonine kinase. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.451 |
KRO06808.1 | KRO07079.1 | IV61_GL001897 | IV61_GL000727 | Hypothetical protein. | ComX; Belongs to the sigma-70 factor family. | 0.629 |
KRO07079.1 | KRO04524.1 | IV61_GL000727 | IV61_GL001999 | ComX; Belongs to the sigma-70 factor family. | Hypothetical protein. | 0.610 |
KRO07079.1 | KRO05712.1 | IV61_GL000727 | IV61_GL001001 | ComX; Belongs to the sigma-70 factor family. | Hypothetical protein. | 0.659 |
KRO07079.1 | KRO06356.1 | IV61_GL000727 | IV61_GL000257 | ComX; Belongs to the sigma-70 factor family. | Serine threonine kinase. | 0.771 |
KRO07079.1 | KRO06808.1 | IV61_GL000727 | IV61_GL001897 | ComX; Belongs to the sigma-70 factor family. | Hypothetical protein. | 0.629 |
KRO07079.1 | KRO07247.1 | IV61_GL000727 | IV61_GL000055 | ComX; Belongs to the sigma-70 factor family. | Hypothetical protein. | 0.629 |
KRO07079.1 | rpoA | IV61_GL000727 | IV61_GL001546 | ComX; Belongs to the sigma-70 factor family. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.809 |
KRO07079.1 | rpoB | IV61_GL000727 | IV61_GL001175 | ComX; Belongs to the sigma-70 factor family. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.832 |
KRO07079.1 | rpoC | IV61_GL000727 | IV61_GL001174 | ComX; Belongs to the sigma-70 factor family. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.837 |
KRO07079.1 | rpoZ | IV61_GL000727 | IV61_GL000263 | ComX; Belongs to the sigma-70 factor family. | Hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.806 |
KRO07079.1 | topA | IV61_GL000727 | IV61_GL002174 | ComX; Belongs to the sigma-70 factor family. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.642 |
KRO07247.1 | KRO07079.1 | IV61_GL000055 | IV61_GL000727 | Hypothetical protein. | ComX; Belongs to the sigma-70 factor family. | 0.629 |
rpoA | KRO07079.1 | IV61_GL001546 | IV61_GL000727 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | ComX; Belongs to the sigma-70 factor family. | 0.809 |
rpoA | rpoB | IV61_GL001546 | IV61_GL001175 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
rpoA | rpoC | IV61_GL001546 | IV61_GL001174 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
rpoA | rpoZ | IV61_GL001546 | IV61_GL000263 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.999 |
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