KRO05774.1 protein (Lactobacillus parabrevis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRO05774.1

L-ribulose 5-phosphate 4-epimerase. (242 aa)

Predicted Functional Partners:

araA

0.999

KRO05775.1

0.982

KRO06281.1

0.962

KRO06354.1

0.960

KRO07168.1

0.953

xylB

0.829

KRO04673.1

0.826

KRO05905.1

0.823

uxaC

0.718

uxaC-2

0.718

Your Current Organism:

Lactobacillus parabrevis

NCBI taxonomy Id: 357278
Other names: ATCC 53295, L. parabrevis, LMG 11984, LMG:11984, Lactobacillus parabrevis Vancanneyt et al. 2006

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRO04673.1	KRO05774.1	IV61_GL001848	IV61_GL000927	Gluconate kinase; Belongs to the FGGY kinase family.	L-ribulose 5-phosphate 4-epimerase.	0.826
KRO04673.1	KRO06281.1	IV61_GL001848	IV61_GL000313	Gluconate kinase; Belongs to the FGGY kinase family.	Actin-like ATPase domain-containing protein.	0.798
KRO04673.1	KRO06354.1	IV61_GL001848	IV61_GL000255	Gluconate kinase; Belongs to the FGGY kinase family.	Pentose-5-phosphate-3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.	0.827
KRO05774.1	KRO04673.1	IV61_GL000927	IV61_GL001848	L-ribulose 5-phosphate 4-epimerase.	Gluconate kinase; Belongs to the FGGY kinase family.	0.826
KRO05774.1	KRO05775.1	IV61_GL000927	IV61_GL000928	L-ribulose 5-phosphate 4-epimerase.	L-ribulokinase.	0.982
KRO05774.1	KRO05905.1	IV61_GL000927	IV61_GL000719	L-ribulose 5-phosphate 4-epimerase.	Gluconate kinase; Belongs to the FGGY kinase family.	0.823
KRO05774.1	KRO06281.1	IV61_GL000927	IV61_GL000313	L-ribulose 5-phosphate 4-epimerase.	Actin-like ATPase domain-containing protein.	0.962
KRO05774.1	KRO06354.1	IV61_GL000927	IV61_GL000255	L-ribulose 5-phosphate 4-epimerase.	Pentose-5-phosphate-3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.	0.960
KRO05774.1	KRO07168.1	IV61_GL000927	IV61_GL000818	L-ribulose 5-phosphate 4-epimerase.	Triosephosphate isomerase.	0.953
KRO05774.1	araA	IV61_GL000927	IV61_GL000926	L-ribulose 5-phosphate 4-epimerase.	L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.	0.999
KRO05774.1	uxaC	IV61_GL000927	IV61_GL000706	L-ribulose 5-phosphate 4-epimerase.	Glucuronate isomerase.	0.718
KRO05774.1	uxaC-2	IV61_GL000927	IV61_GL000715	L-ribulose 5-phosphate 4-epimerase.	Glucuronate isomerase.	0.718
KRO05774.1	xylB	IV61_GL000927	IV61_GL001685	L-ribulose 5-phosphate 4-epimerase.	Xylulose kinase.	0.829
KRO05775.1	KRO05774.1	IV61_GL000928	IV61_GL000927	L-ribulokinase.	L-ribulose 5-phosphate 4-epimerase.	0.982
KRO05775.1	KRO06354.1	IV61_GL000928	IV61_GL000255	L-ribulokinase.	Pentose-5-phosphate-3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.	0.835
KRO05775.1	araA	IV61_GL000928	IV61_GL000926	L-ribulokinase.	L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.	0.986
KRO05905.1	KRO05774.1	IV61_GL000719	IV61_GL000927	Gluconate kinase; Belongs to the FGGY kinase family.	L-ribulose 5-phosphate 4-epimerase.	0.823
KRO05905.1	KRO06281.1	IV61_GL000719	IV61_GL000313	Gluconate kinase; Belongs to the FGGY kinase family.	Actin-like ATPase domain-containing protein.	0.801
KRO05905.1	KRO06354.1	IV61_GL000719	IV61_GL000255	Gluconate kinase; Belongs to the FGGY kinase family.	Pentose-5-phosphate-3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.	0.837
KRO06281.1	KRO04673.1	IV61_GL000313	IV61_GL001848	Actin-like ATPase domain-containing protein.	Gluconate kinase; Belongs to the FGGY kinase family.	0.798