Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KRO05145.1 | KRO05711.1 | IV61_GL001539 | IV61_GL001000 | 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | Nadh oxidase. | 0.541 |
KRO05145.1 | rpmA | IV61_GL001539 | IV61_GL000278 | 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.999 |
KRO05145.1 | rpmB | IV61_GL001539 | IV61_GL000253 | 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | Hypothetical protein; Belongs to the bacterial ribosomal protein bL28 family. | 0.999 |
KRO05145.1 | rpsE | IV61_GL001539 | IV61_GL001554 | 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.999 |
KRO05145.1 | rpsF | IV61_GL001539 | IV61_GL000686 | 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.999 |
KRO05145.1 | rpsJ | IV61_GL001539 | IV61_GL001571 | 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.999 |
KRO05145.1 | rpsP | IV61_GL001539 | IV61_GL000238 | 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.999 |
KRO05711.1 | KRO05145.1 | IV61_GL001000 | IV61_GL001539 | Nadh oxidase. | 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.541 |
KRO05711.1 | KRO06053.1 | IV61_GL001000 | IV61_GL000558 | Nadh oxidase. | Glycine D-amino acid oxidase. | 0.825 |
KRO05711.1 | atpD | IV61_GL001000 | IV61_GL001314 | Nadh oxidase. | F0F1 ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | 0.546 |
KRO05711.1 | atpG | IV61_GL001000 | IV61_GL001315 | Nadh oxidase. | F0F1-type ATP synthase, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | 0.538 |
KRO05711.1 | rpmA | IV61_GL001000 | IV61_GL000278 | Nadh oxidase. | 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.550 |
KRO05711.1 | rpmB | IV61_GL001000 | IV61_GL000253 | Nadh oxidase. | Hypothetical protein; Belongs to the bacterial ribosomal protein bL28 family. | 0.551 |
KRO05711.1 | rpsE | IV61_GL001000 | IV61_GL001554 | Nadh oxidase. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.552 |
KRO05711.1 | rpsF | IV61_GL001000 | IV61_GL000686 | Nadh oxidase. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.548 |
KRO05711.1 | rpsJ | IV61_GL001000 | IV61_GL001571 | Nadh oxidase. | 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.558 |
KRO05711.1 | rpsP | IV61_GL001000 | IV61_GL000238 | Nadh oxidase. | 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.550 |
KRO06053.1 | KRO05711.1 | IV61_GL000558 | IV61_GL001000 | Glycine D-amino acid oxidase. | Nadh oxidase. | 0.825 |
atpD | KRO05711.1 | IV61_GL001314 | IV61_GL001000 | F0F1 ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | Nadh oxidase. | 0.546 |
atpD | atpG | IV61_GL001314 | IV61_GL001315 | F0F1 ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | F0F1-type ATP synthase, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | 0.999 |
page 1 of 4