STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRO05109.1Diguanylate cyclase phosphodiesterase domain 2 containing protein. (230 aa)    
Predicted Functional Partners:
KRO05330.1
Signal transduction diguanylate cyclase.
 
 0.848
KRO05331.1
Signal transduction diguanylate cyclase.
 
 0.848
KRO06899.1
Diguanylate cyclase phosphodiesterase domain-containing protein.
 
 0.847
KRO04898.1
Signal transduction diguanylate cyclase.
 
 0.846
KRO07108.1
GGDEF domain protein.
 
 
 0.717
KRO07106.1
N-acetylglucosaminyltransferase.
 
 
 0.640
KRO07104.1
Hypothetical protein.
 
    0.576
KRO07103.1
Hypothetical protein.
 
     0.574
KRO05110.1
NADH oxidase.
       0.554
KRO07107.1
Cellulose synthase catalytic subunit.
 
   
 0.523
Your Current Organism:
Lactobacillus parabrevis
NCBI taxonomy Id: 357278
Other names: ATCC 53295, L. parabrevis, LMG 11984, LMG:11984, Lactobacillus parabrevis Vancanneyt et al. 2006
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.