STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRO06899.1Diguanylate cyclase phosphodiesterase domain-containing protein. (393 aa)    
Predicted Functional Partners:
KRO05109.1
Diguanylate cyclase phosphodiesterase domain 2 containing protein.
 
 0.847
KRO05329.1
C-di-GMP-specific phosphodiesterase.
 
 0.844
KRO04748.1
C-di-GMP-specific phosphodiesterase.
 
 0.843
KRO04465.1
C-di-GMP-specific phosphodiesterase.
 
 0.842
KRO05669.1
Diguanylate cyclase phosphodiesterase domain 2 containing protein.
 
 
 0.754
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
  0.733
KRO05668.1
Hypothetical protein.
  
     0.530
leuS
leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
   0.496
KRO07106.1
N-acetylglucosaminyltransferase.
 
 
 0.490
KRO07206.1
Transcription regulator.
  
     0.440
Your Current Organism:
Lactobacillus parabrevis
NCBI taxonomy Id: 357278
Other names: ATCC 53295, L. parabrevis, LMG 11984, LMG:11984, Lactobacillus parabrevis Vancanneyt et al. 2006
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