Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KRO06907.1 | KRO06908.1 | IV61_GL001677 | IV61_GL001678 | Hypothetical protein. | Hypothetical protein. | 0.900 |
KRO06908.1 | KRO06907.1 | IV61_GL001678 | IV61_GL001677 | Hypothetical protein. | Hypothetical protein. | 0.900 |
KRO06908.1 | KRO07280.1 | IV61_GL001678 | IV61_GL000088 | Hypothetical protein. | Coenzyme A disulfide reductase. | 0.831 |
KRO06908.1 | dnaJ | IV61_GL001678 | IV61_GL002071 | Hypothetical protein. | Molecular chaperone DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, [...] | 0.850 |
KRO06908.1 | rplK | IV61_GL001678 | IV61_GL000730 | Hypothetical protein. | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.810 |
KRO06908.1 | rplM | IV61_GL001678 | IV61_GL001540 | Hypothetical protein. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.809 |
KRO06908.1 | rplN | IV61_GL001678 | IV61_GL001560 | Hypothetical protein. | 50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.808 |
KRO06908.1 | rplO | IV61_GL001678 | IV61_GL001552 | Hypothetical protein. | 50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.811 |
KRO06908.1 | rplU | IV61_GL001678 | IV61_GL000280 | Hypothetical protein. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.817 |
KRO06908.1 | rplX | IV61_GL001678 | IV61_GL001559 | Hypothetical protein. | 50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.809 |
KRO06908.1 | rpsQ | IV61_GL001678 | IV61_GL001561 | Hypothetical protein. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.812 |
KRO07280.1 | KRO06908.1 | IV61_GL000088 | IV61_GL001678 | Coenzyme A disulfide reductase. | Hypothetical protein. | 0.831 |
KRO07280.1 | dnaJ | IV61_GL000088 | IV61_GL002071 | Coenzyme A disulfide reductase. | Molecular chaperone DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, [...] | 0.853 |
KRO07280.1 | rplK | IV61_GL000088 | IV61_GL000730 | Coenzyme A disulfide reductase. | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.801 |
KRO07280.1 | rplM | IV61_GL000088 | IV61_GL001540 | Coenzyme A disulfide reductase. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
KRO07280.1 | rplN | IV61_GL000088 | IV61_GL001560 | Coenzyme A disulfide reductase. | 50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.834 |
KRO07280.1 | rplO | IV61_GL000088 | IV61_GL001552 | Coenzyme A disulfide reductase. | 50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.999 |
KRO07280.1 | rplU | IV61_GL000088 | IV61_GL000280 | Coenzyme A disulfide reductase. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.821 |
KRO07280.1 | rplX | IV61_GL000088 | IV61_GL001559 | Coenzyme A disulfide reductase. | 50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.790 |
KRO07280.1 | rpsQ | IV61_GL000088 | IV61_GL001561 | Coenzyme A disulfide reductase. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.999 |
page 1 of 5