KRO06814.1 protein (Lactobacillus parabrevis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRO06814.1

Peptide ABC transporter permease. (606 aa)

Predicted Functional Partners:

KRO06813.1

0.975

KRO06815.1

0.714

KRO06191.1

0.706

KRO06875.1

0.652

KRO06579.1

0.523

KRO06580.1

0.503

KRO07278.1

0.478

KRO05038.1

0.435

KRO05556.1

0.434

KRO07279.1

0.433

Your Current Organism:

Lactobacillus parabrevis

NCBI taxonomy Id: 357278
Other names: ATCC 53295, L. parabrevis, LMG 11984, LMG:11984, Lactobacillus parabrevis Vancanneyt et al. 2006

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRO05038.1	KRO05556.1	IV61_GL001740	IV61_GL001165	Transcriptional regulator.	Hypothetical protein.	0.734
KRO05038.1	KRO06814.1	IV61_GL001740	IV61_GL001903	Transcriptional regulator.	Peptide ABC transporter permease.	0.435
KRO05556.1	KRO05038.1	IV61_GL001165	IV61_GL001740	Hypothetical protein.	Transcriptional regulator.	0.734
KRO05556.1	KRO06814.1	IV61_GL001165	IV61_GL001903	Hypothetical protein.	Peptide ABC transporter permease.	0.434
KRO06191.1	KRO06579.1	IV61_GL000456	IV61_GL002296	Peptide ABC transporter ATPase.	Peptide ABC transporter ATPase.	0.786
KRO06191.1	KRO06580.1	IV61_GL000456	IV61_GL002297	Peptide ABC transporter ATPase.	Peptide ABC transporter permease.	0.954
KRO06191.1	KRO06813.1	IV61_GL000456	IV61_GL001902	Peptide ABC transporter ATPase.	Peptide ABC transporter ATPase.	0.798
KRO06191.1	KRO06814.1	IV61_GL000456	IV61_GL001903	Peptide ABC transporter ATPase.	Peptide ABC transporter permease.	0.706
KRO06191.1	KRO07278.1	IV61_GL000456	IV61_GL000086	Peptide ABC transporter ATPase.	Abc transporter, permease protein.	0.999
KRO06191.1	KRO07279.1	IV61_GL000456	IV61_GL000087	Peptide ABC transporter ATPase.	ABC superfamily ATP binding cassette transporter, ABC protein.	0.800
KRO06579.1	KRO06191.1	IV61_GL002296	IV61_GL000456	Peptide ABC transporter ATPase.	Peptide ABC transporter ATPase.	0.786
KRO06579.1	KRO06580.1	IV61_GL002296	IV61_GL002297	Peptide ABC transporter ATPase.	Peptide ABC transporter permease.	0.992
KRO06579.1	KRO06814.1	IV61_GL002296	IV61_GL001903	Peptide ABC transporter ATPase.	Peptide ABC transporter permease.	0.523
KRO06579.1	KRO07278.1	IV61_GL002296	IV61_GL000086	Peptide ABC transporter ATPase.	Abc transporter, permease protein.	0.999
KRO06580.1	KRO06191.1	IV61_GL002297	IV61_GL000456	Peptide ABC transporter permease.	Peptide ABC transporter ATPase.	0.954
KRO06580.1	KRO06579.1	IV61_GL002297	IV61_GL002296	Peptide ABC transporter permease.	Peptide ABC transporter ATPase.	0.992
KRO06580.1	KRO06813.1	IV61_GL002297	IV61_GL001902	Peptide ABC transporter permease.	Peptide ABC transporter ATPase.	0.780
KRO06580.1	KRO06814.1	IV61_GL002297	IV61_GL001903	Peptide ABC transporter permease.	Peptide ABC transporter permease.	0.503
KRO06580.1	KRO07278.1	IV61_GL002297	IV61_GL000086	Peptide ABC transporter permease.	Abc transporter, permease protein.	0.401
KRO06580.1	KRO07279.1	IV61_GL002297	IV61_GL000087	Peptide ABC transporter permease.	ABC superfamily ATP binding cassette transporter, ABC protein.	0.780