STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR30282.1Ferredoxin-nitrite reductase. (591 aa)    
Predicted Functional Partners:
SFR31045.1
Hypothetical protein.
  
 
 0.981
SFR47442.1
Phosphoadenosine phosphosulfate reductase.
 
 
 0.981
SFR30868.1
uroporphyrin-III C-methyltransferase; Belongs to the precorrin methyltransferase family.
 
  
 0.973
SFR30280.1
Assimilatory nitrate reductase (ferredoxin) precursor; Manually curated.
 
  
 0.965
SFR30284.1
MFS transporter, NNP family, nitrate/nitrite transporter.
 
  
 0.934
SFR46391.1
Pyridine nucleotide-disulphide oxidoreductase.
 
 0.906
SFR30568.1
Glutamine synthetase.
     
 0.859
SFR44369.1
Glutamate dehydrogenase (NAD(P)+); Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
     
 0.826
SFR30281.1
Hypothetical protein.
       0.773
SFR60580.1
Cystathionine beta-lyase/cystathionine gamma-synthase.
  
 0.772
Your Current Organism:
Halorubrum sodomense
NCBI taxonomy Id: 35743
Other names: ATCC 33755, CIP 105330, DSM 3755, H. sodomense, Halobacterium sodomense, Halobacterium sodomitanum, Halobacterium sodomiticum, Halorubrobacterium sodomense, IFO 14740, JCM 8880, NBRC 14740, NCIMB 2197, strain RD-26
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