STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR30332.1Ammonium transporter, Amt family; Manually curated; Belongs to the P(II) protein family. (575 aa)    
Predicted Functional Partners:
SFR55411.1
Glutamate synthase domain-containing protein 2.
 
  
 0.795
SFR39705.1
Glutamate synthase (NADPH/NADH) large chain.
 
   
 0.762
SFR36412.1
PAS domain S-box-containing protein.
    
 0.761
SFR30568.1
Glutamine synthetase.
 
  
 0.735
SFR50861.1
NhaP-type Na+/H+ or K+/H+ antiporter.
     
 0.567
SFR32753.1
Aconitase.
  
 
 0.554
SFR32942.1
Pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase).
      
 0.544
SFR30296.1
Amino acid/polyamine/organocation transporter, APC superfamily.
    
 
 0.526
SFR31030.1
Formate/nitrite transporter FocA, FNT family.
    
 
 0.526
SFR55717.1
Acetolactate synthase large subunit; Belongs to the TPP enzyme family.
   
  
 0.518
Your Current Organism:
Halorubrum sodomense
NCBI taxonomy Id: 35743
Other names: ATCC 33755, CIP 105330, DSM 3755, H. sodomense, Halobacterium sodomense, Halobacterium sodomitanum, Halobacterium sodomiticum, Halorubrobacterium sodomense, IFO 14740, JCM 8880, NBRC 14740, NCIMB 2197, strain RD-26
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