STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR30459.1propionyl-CoA carboxylase carboxyltransferase subunit. (514 aa)    
Predicted Functional Partners:
SFR30462.1
acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein.
 
 0.999
SFR30460.1
Hypothetical protein.
    
 0.978
SFR32942.1
Pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase).
  
 
 0.963
SFR48468.1
methylmalonyl-CoA epimerase.
 
 
 0.948
SFR38238.1
acetyl-CoA C-acetyltransferase.
  
 
 0.941
SFR48414.1
acetyl-CoA C-acetyltransferase.
  
 
 0.941
SFR58387.1
acetyl-CoA acyltransferase.
  
 
 0.940
SFR45569.1
2-isopropylmalate synthase; Non-canonical start codon; manually curated; Belongs to the alpha-IPM synthase/homocitrate synthase family.
  
 0.936
SFR50348.1
acetyl-CoA synthetase.
  
 0.928
SFR34819.1
Acetyltransferase.
     
 0.915
Your Current Organism:
Halorubrum sodomense
NCBI taxonomy Id: 35743
Other names: ATCC 33755, CIP 105330, DSM 3755, H. sodomense, Halobacterium sodomense, Halobacterium sodomitanum, Halobacterium sodomiticum, Halorubrobacterium sodomense, IFO 14740, JCM 8880, NBRC 14740, NCIMB 2197, strain RD-26
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