STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR30524.1PAS domain S-box-containing protein. (593 aa)    
Predicted Functional Partners:
SFR30698.1
Chemotaxis protein methyltransferase CheR.
   
  0.797
SFR47286.1
Two-component system, OmpR family, response regulator MprA.
 
 
 0.663
dbh
DNA polymerase IV (DinB-like DNA polymerase); Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis.
 
     0.596
SFR30525.1
Na+/melibiose symporter.
       0.527
SFR48603.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
  
 
0.514
SFR30858.1
HalX domain-containing protein; Manually curated.
  
  
  0.504
SFR30859.1
PAS domain S-box-containing protein.
 
  
  0.471
SFR55574.1
PAS domain S-box-containing protein.
 
     0.468
SFR44886.1
Response regulator receiver domain-containing protein.
  
  
  0.467
SFR38755.1
Two-component system, chemotaxis family, response regulator CheY.
  
  
  0.450
Your Current Organism:
Halorubrum sodomense
NCBI taxonomy Id: 35743
Other names: ATCC 33755, CIP 105330, DSM 3755, H. sodomense, Halobacterium sodomense, Halobacterium sodomitanum, Halobacterium sodomiticum, Halorubrobacterium sodomense, IFO 14740, JCM 8880, NBRC 14740, NCIMB 2197, strain RD-26
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