STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR30951.1mRNA interferase MazF; Manually curated. (117 aa)    
Predicted Functional Partners:
SFR30953.1
CopG family transcriptional regulator, nickel-responsive regulator.
  
 
 0.822
SFR30952.1
Looped-hinge helix DNA binding domain-containing protein, AbrB family.
       0.773
SFR30981.1
CopG family transcriptional regulator, nickel-responsive regulator; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family.
  
 
 0.721
SFR48635.1
Ribbon-helix-helix protein, copG family.
  
 
 0.721
SFR36021.1
Ribbon-helix-helix protein, copG family.
   
 
 0.451
SFR36207.1
Ribbon-helix-helix protein, copG family.
   
 
 0.451
SFR30973.1
Transcriptional regulator, HxlR family.
   
    0.412
SFR48201.1
Transcriptional regulator, HxlR family.
   
    0.412
SFR49173.1
Hypothetical protein.
   
    0.412
SFR55559.1
Transcriptional regulator, HxlR family.
   
    0.412
Your Current Organism:
Halorubrum sodomense
NCBI taxonomy Id: 35743
Other names: ATCC 33755, CIP 105330, DSM 3755, H. sodomense, Halobacterium sodomense, Halobacterium sodomitanum, Halobacterium sodomiticum, Halorubrobacterium sodomense, IFO 14740, JCM 8880, NBRC 14740, NCIMB 2197, strain RD-26
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