STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR33453.1Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase. (674 aa)    
Predicted Functional Partners:
SFR33444.1
Hypothetical protein.
       0.802
SFR33470.1
Hypothetical protein.
       0.703
SFR33385.1
Hypothetical protein.
       0.687
SFR33392.1
Hypothetical protein.
       0.687
SFR33399.1
Hypothetical protein.
       0.687
SFR33405.1
Hypothetical protein.
       0.687
SFR34190.1
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase.
  
     0.686
SFR50261.1
Flagellar protein FlaJ.
 
  
 0.600
SFR40290.1
Flagellar protein FlaJ.
 
  
 0.589
SFR33377.1
Hypothetical protein.
       0.583
Your Current Organism:
Halorubrum sodomense
NCBI taxonomy Id: 35743
Other names: ATCC 33755, CIP 105330, DSM 3755, H. sodomense, Halobacterium sodomense, Halobacterium sodomitanum, Halobacterium sodomiticum, Halorubrobacterium sodomense, IFO 14740, JCM 8880, NBRC 14740, NCIMB 2197, strain RD-26
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