STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR34209.1Threonine dehydrogenase. (350 aa)    
Predicted Functional Partners:
SFR37452.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
   
 
  0.839
SFR46947.1
FAD/FMN-containing dehydrogenase.
    
 0.836
SFR39961.1
Alcohol dehydrogenase, propanol-preferring.
0.675
SFR48861.1
L-threonine aldolase.
  
 
 0.608
SFR34200.1
Uncharacterized membrane protein YfcA.
       0.605
SFR34217.1
Hypothetical protein.
       0.563
SFR31111.1
Glutathione-independent formaldehyde dehydrogenase.
  
  
 
0.526
SFR56139.1
Alcohol dehydrogenase.
 
0.479
SFR31145.1
Alcohol dehydrogenase GroES-like domain-containing protein.
 
  
0.459
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
   
 0.446
Your Current Organism:
Halorubrum sodomense
NCBI taxonomy Id: 35743
Other names: ATCC 33755, CIP 105330, DSM 3755, H. sodomense, Halobacterium sodomense, Halobacterium sodomitanum, Halobacterium sodomiticum, Halorubrobacterium sodomense, IFO 14740, JCM 8880, NBRC 14740, NCIMB 2197, strain RD-26
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