STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR35270.1Formate dehydrogenase major subunit. (698 aa)    
Predicted Functional Partners:
SFR46391.1
Pyridine nucleotide-disulphide oxidoreductase.
 
  
 0.924
SFR60734.1
Allosteric NADP-dependent malic enzyme.
     
 0.852
SFR46740.1
Putative molybdopterin biosynthesis protein.
 
 0.706
SFR45940.1
Glycerol-3-phosphate dehydrogenase subunit C.
    
 0.605
SFR46947.1
FAD/FMN-containing dehydrogenase.
    
 0.603
SFR39043.1
NADH-quinone oxidoreductase subunit I.
  
 
 0.571
SFR30284.1
MFS transporter, NNP family, nitrate/nitrite transporter.
 
  
 0.567
SFR35278.1
Hypothetical protein.
       0.548
SFR45079.1
Cytochrome c oxidase subunit I+III; Belongs to the heme-copper respiratory oxidase family.
     
 0.545
SFR55411.1
Glutamate synthase domain-containing protein 2.
     
 0.521
Your Current Organism:
Halorubrum sodomense
NCBI taxonomy Id: 35743
Other names: ATCC 33755, CIP 105330, DSM 3755, H. sodomense, Halobacterium sodomense, Halobacterium sodomitanum, Halobacterium sodomiticum, Halorubrobacterium sodomense, IFO 14740, JCM 8880, NBRC 14740, NCIMB 2197, strain RD-26
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