Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFR35296.1 | SFR35313.1 | SAMN04487937_1419 | SAMN04487937_1421 | Thioredoxin. | cob(I)alamin adenosyltransferase. | 0.562 |
SFR35296.1 | SFR35322.1 | SAMN04487937_1419 | SAMN04487937_1422 | Thioredoxin. | Adenosylcobinamide hydrolase. | 0.562 |
SFR35296.1 | SFR35329.1 | SAMN04487937_1419 | SAMN04487937_1423 | Thioredoxin. | Histidinol-phosphate aminotransferase. | 0.562 |
SFR35296.1 | SFR35339.1 | SAMN04487937_1419 | SAMN04487937_1424 | Thioredoxin. | GTP:adenosylcobinamide-phosphate guanylyltransferase. | 0.562 |
SFR35296.1 | SFR35376.1 | SAMN04487937_1419 | SAMN04487937_1428 | Thioredoxin. | TIGR00303 family protein; Belongs to the UPF0284 family. | 0.562 |
SFR35296.1 | cbiA | SAMN04487937_1419 | SAMN04487937_1427 | Thioredoxin. | Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family. | 0.562 |
SFR35296.1 | cobD | SAMN04487937_1419 | SAMN04487937_1426 | Thioredoxin. | Adenosylcobinamide-phosphate synthase; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group. | 0.562 |
SFR35296.1 | cobQ | SAMN04487937_1419 | SAMN04487937_1420 | Thioredoxin. | Adenosylcobyric acid synthase (glutamine-hydrolysing); Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily. | 0.598 |
SFR35296.1 | cobS | SAMN04487937_1419 | SAMN04487937_1425 | Thioredoxin. | Cobalamin-5'-phosphate synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family. | 0.562 |
SFR35296.1 | dnaJ | SAMN04487937_1419 | SAMN04487937_1750 | Thioredoxin. | Molecular chaperone DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, [...] | 0.522 |
SFR35313.1 | SFR35296.1 | SAMN04487937_1421 | SAMN04487937_1419 | cob(I)alamin adenosyltransferase. | Thioredoxin. | 0.562 |
SFR35313.1 | SFR35322.1 | SAMN04487937_1421 | SAMN04487937_1422 | cob(I)alamin adenosyltransferase. | Adenosylcobinamide hydrolase. | 0.976 |
SFR35313.1 | SFR35329.1 | SAMN04487937_1421 | SAMN04487937_1423 | cob(I)alamin adenosyltransferase. | Histidinol-phosphate aminotransferase. | 0.924 |
SFR35313.1 | SFR35339.1 | SAMN04487937_1421 | SAMN04487937_1424 | cob(I)alamin adenosyltransferase. | GTP:adenosylcobinamide-phosphate guanylyltransferase. | 0.798 |
SFR35313.1 | SFR35376.1 | SAMN04487937_1421 | SAMN04487937_1428 | cob(I)alamin adenosyltransferase. | TIGR00303 family protein; Belongs to the UPF0284 family. | 0.846 |
SFR35313.1 | cbiA | SAMN04487937_1421 | SAMN04487937_1427 | cob(I)alamin adenosyltransferase. | Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family. | 0.993 |
SFR35313.1 | cobD | SAMN04487937_1421 | SAMN04487937_1426 | cob(I)alamin adenosyltransferase. | Adenosylcobinamide-phosphate synthase; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group. | 0.993 |
SFR35313.1 | cobQ | SAMN04487937_1421 | SAMN04487937_1420 | cob(I)alamin adenosyltransferase. | Adenosylcobyric acid synthase (glutamine-hydrolysing); Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily. | 0.994 |
SFR35313.1 | cobS | SAMN04487937_1421 | SAMN04487937_1425 | cob(I)alamin adenosyltransferase. | Cobalamin-5'-phosphate synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family. | 0.991 |
SFR35322.1 | SFR35296.1 | SAMN04487937_1422 | SAMN04487937_1419 | Adenosylcobinamide hydrolase. | Thioredoxin. | 0.562 |
page 1 of 5