STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR35750.1Haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. (287 aa)    
Predicted Functional Partners:
hisC
Histidinol-phosphate aminotransferase.
 
 
  0.721
SFR35759.1
Hypothetical protein.
       0.685
amzA
Archaemetzincin; Probable zinc metalloprotease whose natural substrate is unknown.
       0.592
SFR36246.1
Condensin subunit ScpA.
  
    0.483
SFR30766.1
Rad3-related DNA helicase.
  
     0.467
SFR56228.1
Cytochrome c oxidase assembly protein subunit 15.
  
     0.464
SFR34826.1
Hypothetical protein.
  
 
  0.461
hisI
phosphoribosyl-AMP cyclohydrolase; Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP.
 
    0.452
hisB
Imidazoleglycerol-phosphate dehydratase.
    
 0.442
SFR35743.1
Uncharacterized OsmC-related protein.
       0.425
Your Current Organism:
Halorubrum sodomense
NCBI taxonomy Id: 35743
Other names: ATCC 33755, CIP 105330, DSM 3755, H. sodomense, Halobacterium sodomense, Halobacterium sodomitanum, Halobacterium sodomiticum, Halorubrobacterium sodomense, IFO 14740, JCM 8880, NBRC 14740, NCIMB 2197, strain RD-26
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