STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR36878.1PAS domain S-box-containing protein. (352 aa)    
Predicted Functional Partners:
SFR47286.1
Two-component system, OmpR family, response regulator MprA.
 
 0.628
SFR48495.1
PAS domain S-box-containing protein.
  
 
  0.556
SFR55638.1
Methyl-accepting chemotaxis protein.
  
  
  0.553
SFR39145.1
PAS domain S-box-containing protein.
  
 
  0.522
SFR30738.1
PAS fold.
 
 
  0.518
SFR32942.1
Pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase).
  
 
  0.516
SFR37452.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
  0.512
SFR56126.1
Signal transduction histidine kinase.
  
 
  0.504
SFR50552.1
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains.
  
 
  0.500
SFR48401.1
PAS domain S-box-containing protein.
 
 
  0.470
Your Current Organism:
Halorubrum sodomense
NCBI taxonomy Id: 35743
Other names: ATCC 33755, CIP 105330, DSM 3755, H. sodomense, Halobacterium sodomense, Halobacterium sodomitanum, Halobacterium sodomiticum, Halorubrobacterium sodomense, IFO 14740, JCM 8880, NBRC 14740, NCIMB 2197, strain RD-26
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