STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR36957.1Serine/threonine protein phosphatase 1. (227 aa)    
Predicted Functional Partners:
SFR30652.1
Putative mRNA 3-end processing factor.
   
  0.832
SFR30220.1
Hypothetical protein.
   
 0.804
ppk
Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP); Belongs to the polyphosphate kinase 1 (PPK1) family.
      0.797
SFR56342.1
SNF2 family N-terminal domain-containing protein.
  
 
 
 0.754
SFR48435.1
Translation initiation factor 2 subunit alpha (aeIF-2a).
   
  0.720
SFR30292.1
Tetratricopeptide repeat-containing protein.
  
 
 0.663
SFR30557.1
Large subunit ribosomal protein L32e.
 
 
 0.658
SFR30902.1
Dual specificity phosphatase, catalytic domain; Manually curated.
    
 0.654
SFR30264.1
Cytochrome P450.
  
 
 0.537
rpl3
Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
  
 
  0.517
Your Current Organism:
Halorubrum sodomense
NCBI taxonomy Id: 35743
Other names: ATCC 33755, CIP 105330, DSM 3755, H. sodomense, Halobacterium sodomense, Halobacterium sodomitanum, Halobacterium sodomiticum, Halorubrobacterium sodomense, IFO 14740, JCM 8880, NBRC 14740, NCIMB 2197, strain RD-26
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