STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR38386.1Glyoxylase, beta-lactamase superfamily II. (308 aa)    
Predicted Functional Partners:
SFR38378.1
Radical SAM superfamily enzyme with C-terminal helix-hairpin-helix motif.
       0.843
SFR36313.1
Glyoxylase, beta-lactamase superfamily II.
 
 0.839
SFR37780.1
Thiosulfate/3-mercaptopyruvate sulfurtransferase.
 
 0.834
SFR33147.1
Glyoxylase, beta-lactamase superfamily II.
 
 0.833
SFR38368.1
Hypothetical protein.
       0.511
SFR36402.1
Glyoxylase, beta-lactamase superfamily II.
  
     0.441
SFR30264.1
Cytochrome P450.
  
   
 0.440
SFR46391.1
Pyridine nucleotide-disulphide oxidoreductase.
 
 
  0.411
Your Current Organism:
Halorubrum sodomense
NCBI taxonomy Id: 35743
Other names: ATCC 33755, CIP 105330, DSM 3755, H. sodomense, Halobacterium sodomense, Halobacterium sodomitanum, Halobacterium sodomiticum, Halorubrobacterium sodomense, IFO 14740, JCM 8880, NBRC 14740, NCIMB 2197, strain RD-26
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