STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR45330.1Amino acid/amide ABC transporter membrane protein 2, HAAT family. (393 aa)    
Predicted Functional Partners:
SFR45343.1
Amino acid/amide ABC transporter membrane protein 1, HAAT family.
 
0.999
SFR45304.1
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family.
 
 0.998
SFR45317.1
Branched-chain amino acid transport system ATP-binding protein.
 
 0.998
SFR30907.1
Branched-chain amino acid transport system ATP-binding protein.
 
 0.993
SFR30905.1
Branched-chain amino acid transport system permease protein.
 
 0.990
SFR45357.1
Branched-chain amino acid transport system substrate-binding protein.
 
 
 0.988
SFR30908.1
Branched-chain amino acid transport system ATP-binding protein.
 
 0.986
SFR30909.1
Amino acid/amide ABC transporter substrate-binding protein, HAAT family (TC 3.A.1.4.-).
 
 
 0.943
SFR45290.1
Permease of the drug/metabolite transporter (DMT) superfamily.
       0.668
SFR30906.1
Amino acid/amide ABC transporter membrane protein 2, HAAT family (TC 3.A.1.4.-).
  
  
 
0.568
Your Current Organism:
Halorubrum sodomense
NCBI taxonomy Id: 35743
Other names: ATCC 33755, CIP 105330, DSM 3755, H. sodomense, Halobacterium sodomense, Halobacterium sodomitanum, Halobacterium sodomiticum, Halorubrobacterium sodomense, IFO 14740, JCM 8880, NBRC 14740, NCIMB 2197, strain RD-26
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.