STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR46231.1Pimeloyl-ACP methyl ester carboxylesterase. (302 aa)    
Predicted Functional Partners:
SFR32942.1
Pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase).
    
 0.854
SFR46218.1
2-polyprenyl-6-methoxyphenol hydroxylase; Manually curated.
 
    0.849
SFR30264.1
Cytochrome P450.
 
 0.508
SFR36957.1
Serine/threonine protein phosphatase 1.
    
  0.481
SFR40191.1
Phosphoesterase, MJ0936 family.
    
  0.481
gshA
Carboxylate-amine ligase; Catalyzes the synthesis of gamma-glutamylcysteine (gamma-GC), the main low-molecular-weight thiol compound instead of glutathione in halophilic archaea; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.
  
    0.454
SFR31145.1
Alcohol dehydrogenase GroES-like domain-containing protein.
  
  0.418
Your Current Organism:
Halorubrum sodomense
NCBI taxonomy Id: 35743
Other names: ATCC 33755, CIP 105330, DSM 3755, H. sodomense, Halobacterium sodomense, Halobacterium sodomitanum, Halobacterium sodomiticum, Halorubrobacterium sodomense, IFO 14740, JCM 8880, NBRC 14740, NCIMB 2197, strain RD-26
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