STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR47198.1UDP-glucose 4-epimerase. (340 aa)    
Predicted Functional Partners:
SFR47222.1
Nucleoside-diphosphate-sugar epimerase.
 
  
 
0.905
SFR47210.1
Nucleoside-diphosphate-sugar epimerase.
 
    
0.846
SFR47257.1
UDPglucose 6-dehydrogenase.
 
 0.804
SFR37452.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 0.756
rps3ae
Small subunit ribosomal protein S3Ae; Belongs to the eukaryotic ribosomal protein eS1 family.
  
  0.659
rpl7ae
LSU ribosomal protein L7AE; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.
  
  0.640
SFR47234.1
Sugar-specific transcriptional regulator TrmB.
 
     0.635
SFR34610.1
dTDP-4-dehydrorhamnose reductase.
  
0.612
rps15
Small subunit ribosomal protein S15.
  
  0.607
rps14
Small subunit ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles.
   
  0.599
Your Current Organism:
Halorubrum sodomense
NCBI taxonomy Id: 35743
Other names: ATCC 33755, CIP 105330, DSM 3755, H. sodomense, Halobacterium sodomense, Halobacterium sodomitanum, Halobacterium sodomiticum, Halorubrobacterium sodomense, IFO 14740, JCM 8880, NBRC 14740, NCIMB 2197, strain RD-26
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