STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR48355.1Cysteine desulfurase / selenocysteine lyase. (536 aa)    
Predicted Functional Partners:
SFR30687.1
Nitrogen fixation protein NifU.
 
0.919
SFR33271.1
Fe-S cluster assembly ATP-binding protein.
  
 0.916
SFR33265.1
Iron-regulated ABC transporter membrane component SufB.
 
 0.907
SFR30728.1
Cysteine desulfurase / selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
  
  
 
0.891
SFR33257.1
Fe-S cluster assembly protein SufD.
 
 0.867
SFR32148.1
Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family.
    
   0.731
SFR31042.1
Selenocysteine lyase/Cysteine desulfurase.
  
  
 
0.591
SFR48362.1
GMP synthase (glutamine-hydrolysing).
       0.563
SFR46740.1
Putative molybdopterin biosynthesis protein.
  
 
 0.529
SFR34093.1
Thioredoxin reductase (NADPH).
  
 
  0.418
Your Current Organism:
Halorubrum sodomense
NCBI taxonomy Id: 35743
Other names: ATCC 33755, CIP 105330, DSM 3755, H. sodomense, Halobacterium sodomense, Halobacterium sodomitanum, Halobacterium sodomiticum, Halorubrobacterium sodomense, IFO 14740, JCM 8880, NBRC 14740, NCIMB 2197, strain RD-26
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