STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR49675.1Trk system potassium uptake protein TrkA. (217 aa)    
Predicted Functional Partners:
SFR44028.1
Trk system potassium uptake protein TrkH.
 
 
 0.809
SFR44039.1
Trk system potassium uptake protein TrkH.
 
 
 0.809
SFR44074.1
Trk system potassium uptake protein TrkH.
 
 
 0.785
SFR49687.1
Amino acid transporter.
     
 0.779
SFR30593.1
Molybdopterin synthase catalytic subunit.
   
    0.515
SFR49698.1
Trk system potassium uptake protein TrkA.
 
    
0.511
aroA-2
Fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase; Catalyzes a transaldol reaction between 6-deoxy-5- ketofructose 1-phosphate (DKFP) and L-aspartate semialdehyde (ASA) with an elimination of hydroxypyruvaldehyde phosphate to yield 2-amino-3,7- dideoxy-D-threo-hept-6-ulosonate (ADH). Plays a key role in an alternative pathway of the biosynthesis of 3-dehydroquinate (DHQ), which is involved in the canonical pathway for the biosynthesis of aromatic amino acids.
   
    0.456
SFR30867.1
uroporphyrinogen-III synthase.
  
    0.445
SFR50861.1
NhaP-type Na+/H+ or K+/H+ antiporter.
 
   
 0.432
SFR32135.1
Putative serine protein kinase, PrkA.
   
    0.406
Your Current Organism:
Halorubrum sodomense
NCBI taxonomy Id: 35743
Other names: ATCC 33755, CIP 105330, DSM 3755, H. sodomense, Halobacterium sodomense, Halobacterium sodomitanum, Halobacterium sodomiticum, Halorubrobacterium sodomense, IFO 14740, JCM 8880, NBRC 14740, NCIMB 2197, strain RD-26
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