STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR51917.1BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase. (336 aa)    
Predicted Functional Partners:
SFR30462.1
acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein.
  
 0.994
SFR57252.1
Predicted ATP-dependent carboligase, ATP-grasp superfamily.
  
 0.973
SFR32942.1
Pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase).
  
 
 0.946
SFR30459.1
propionyl-CoA carboxylase carboxyltransferase subunit.
 
 
 0.837
SFR30531.1
Acetyl-CoA carboxylase, carboxyltransferase component.
 
 
 0.836
SFR36029.1
Biotin transport system substrate-specific component.
 
   
 0.786
SFR34819.1
Acetyltransferase.
     
 0.764
rpl4
Large subunit ribosomal protein L4e; Forms part of the polypeptide exit tunnel.
    
 0.749
SFR37452.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 0.749
SFR30223.1
Aspartate kinase; Belongs to the aspartokinase family.
     
 0.735
Your Current Organism:
Halorubrum sodomense
NCBI taxonomy Id: 35743
Other names: ATCC 33755, CIP 105330, DSM 3755, H. sodomense, Halobacterium sodomense, Halobacterium sodomitanum, Halobacterium sodomiticum, Halorubrobacterium sodomense, IFO 14740, JCM 8880, NBRC 14740, NCIMB 2197, strain RD-26
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