STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR52371.1Small-conductance mechanosensitive channel. (318 aa)    
Predicted Functional Partners:
SFR52359.1
N-carbamoyl-L-amino-acid hydrolase.
 
     0.581
SFR52382.1
3-oxoacyl-[acyl-carrier protein] reductase.
       0.511
SFR52392.1
Mannose-6-phosphate isomerase, cupin superfamily.
       0.511
SFR52405.1
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).
       0.457
SFR30769.1
Nonsense-mediated mRNA decay protein 3.
   
    0.434
SFR50861.1
NhaP-type Na+/H+ or K+/H+ antiporter.
 
   
 0.419
SFR50999.1
Mechanosensitive ion channel.
  
     0.417
Your Current Organism:
Halorubrum sodomense
NCBI taxonomy Id: 35743
Other names: ATCC 33755, CIP 105330, DSM 3755, H. sodomense, Halobacterium sodomense, Halobacterium sodomitanum, Halobacterium sodomiticum, Halorubrobacterium sodomense, IFO 14740, JCM 8880, NBRC 14740, NCIMB 2197, strain RD-26
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