STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR58441.1Citrate lyase subunit beta / citryl-CoA lyase. (306 aa)    
Predicted Functional Partners:
SFR32942.1
Pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase).
  
 
 0.959
SFR44379.1
Citrate lyase subunit beta / citryl-CoA lyase.
  
  
 
0.902
SFR60734.1
Allosteric NADP-dependent malic enzyme.
  
 
  0.887
SFR58429.1
Isocitrate lyase.
    
 0.883
SFR30702.1
L-fuculose 1-phosphate aldolase.
   
    0.832
SFR58413.1
Hypothetical protein.
       0.773
SFR30616.1
triphosphoribosyl-dephospho-CoA synthase.
  
  
 0.703
SFR50348.1
acetyl-CoA synthetase.
   
 0.671
SFR44389.1
Acyl dehydratase.
 
 
 0.649
SFR58456.1
CoA:oxalate CoA-transferase.
 
 
 0.627
Your Current Organism:
Halorubrum sodomense
NCBI taxonomy Id: 35743
Other names: ATCC 33755, CIP 105330, DSM 3755, H. sodomense, Halobacterium sodomense, Halobacterium sodomitanum, Halobacterium sodomiticum, Halorubrobacterium sodomense, IFO 14740, JCM 8880, NBRC 14740, NCIMB 2197, strain RD-26
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