STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE49107.1Uncharacterized protein YcnI. (237 aa)    
Predicted Functional Partners:
SFF61455.1
Copper transport protein.
 
  
 0.974
SFE68696.1
Copper transport protein.
 
  
 0.971
SFE49124.1
Hypothetical protein.
  
  
 0.898
SFF45029.1
Hypothetical protein.
 
  
 0.671
SFF88864.1
Putative copper resistance protein D.
  
  
 0.662
SFF88923.1
Hypothetical protein.
  
  
 0.590
SFE49141.1
Hypothetical protein.
       0.510
SFE49157.1
TIGR03943 family protein.
       0.510
SFF03643.1
ABC-2 family transporter protein.
  
     0.500
SFE72386.1
MerR family regulatory protein.
  
     0.488
Your Current Organism:
Actinoplanes philippinensis
NCBI taxonomy Id: 35752
Other names: A. philippinensis, ATCC 12427, DSM 43019, IFO 13878, JCM 3001, NBRC 13878, NRRL 2506, VKM Ac-842
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.