SFE73081.1 protein (Actinoplanes philippinensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SFE73081.1

Putative multiple sugar transport system substrate-binding protein. (377 aa)

Predicted Functional Partners:

SFE73042.1

0.993

SFE73065.1

0.900

SFF15173.1

0.862

SFF18633.1

0.862

SFF18648.1

0.782

SFF15166.1

0.778

SFF15188.1

0.759

SFE70681.1

0.750

araA

0.743

SFF18657.1

0.679

Your Current Organism:

Actinoplanes philippinensis

NCBI taxonomy Id: 35752
Other names: A. philippinensis, ATCC 12427, DSM 43019, IFO 13878, JCM 3001, NBRC 13878, NRRL 2506, VKM Ac-842

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFE70681.1	SFE73042.1	SAMN05421541_103150	SAMN05421541_103270	Putative multiple sugar transport system substrate-binding protein.	Putative multiple sugar transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.863
SFE70681.1	SFE73065.1	SAMN05421541_103150	SAMN05421541_103271	Putative multiple sugar transport system substrate-binding protein.	Putative multiple sugar transport system ATP-binding protein.	0.779
SFE70681.1	SFE73081.1	SAMN05421541_103150	SAMN05421541_103272	Putative multiple sugar transport system substrate-binding protein.	Putative multiple sugar transport system substrate-binding protein.	0.750
SFE70681.1	SFF15166.1	SAMN05421541_103150	SAMN05421541_106430	Putative multiple sugar transport system substrate-binding protein.	Putative multiple sugar transport system ATP-binding protein.	0.783
SFE70681.1	SFF15173.1	SAMN05421541_103150	SAMN05421541_106431	Putative multiple sugar transport system substrate-binding protein.	Putative multiple sugar transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.862
SFE70681.1	SFF15188.1	SAMN05421541_103150	SAMN05421541_106432	Putative multiple sugar transport system substrate-binding protein.	Putative multiple sugar transport system substrate-binding protein.	0.762
SFE70681.1	SFF18633.1	SAMN05421541_103150	SAMN05421541_1078	Putative multiple sugar transport system substrate-binding protein.	Putative multiple sugar transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.862
SFE70681.1	SFF18648.1	SAMN05421541_103150	SAMN05421541_1079	Putative multiple sugar transport system substrate-binding protein.	Putative multiple sugar transport system ATP-binding protein.	0.784
SFE70681.1	SFF18657.1	SAMN05421541_103150	SAMN05421541_10710	Putative multiple sugar transport system substrate-binding protein.	Putative multiple sugar transport system substrate-binding protein.	0.760
SFE73042.1	SFE70681.1	SAMN05421541_103270	SAMN05421541_103150	Putative multiple sugar transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	Putative multiple sugar transport system substrate-binding protein.	0.863
SFE73042.1	SFE73065.1	SAMN05421541_103270	SAMN05421541_103271	Putative multiple sugar transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	Putative multiple sugar transport system ATP-binding protein.	0.969
SFE73042.1	SFE73081.1	SAMN05421541_103270	SAMN05421541_103272	Putative multiple sugar transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	Putative multiple sugar transport system substrate-binding protein.	0.993
SFE73042.1	SFF15166.1	SAMN05421541_103270	SAMN05421541_106430	Putative multiple sugar transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	Putative multiple sugar transport system ATP-binding protein.	0.870
SFE73042.1	SFF15173.1	SAMN05421541_103270	SAMN05421541_106431	Putative multiple sugar transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	Putative multiple sugar transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.941
SFE73042.1	SFF15188.1	SAMN05421541_103270	SAMN05421541_106432	Putative multiple sugar transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	Putative multiple sugar transport system substrate-binding protein.	0.864
SFE73042.1	SFF18633.1	SAMN05421541_103270	SAMN05421541_1078	Putative multiple sugar transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	Putative multiple sugar transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.842
SFE73042.1	SFF18648.1	SAMN05421541_103270	SAMN05421541_1079	Putative multiple sugar transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	Putative multiple sugar transport system ATP-binding protein.	0.870
SFE73042.1	SFF18657.1	SAMN05421541_103270	SAMN05421541_10710	Putative multiple sugar transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	Putative multiple sugar transport system substrate-binding protein.	0.863
SFE73042.1	araA	SAMN05421541_103270	SAMN05421541_103273	Putative multiple sugar transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.	0.536
SFE73065.1	SFE70681.1	SAMN05421541_103271	SAMN05421541_103150	Putative multiple sugar transport system ATP-binding protein.	Putative multiple sugar transport system substrate-binding protein.	0.779