STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE75718.1Helix-turn-helix domain-containing protein. (307 aa)    
Predicted Functional Partners:
SFE53120.1
Protein of unknown function.
 
     0.778
SFF67531.1
Protein of unknown function.
 
     0.778
SFF61641.1
Protein of unknown function.
 
     0.777
SFF41671.1
Protein of unknown function.
 
     0.776
SFF84788.1
Protein of unknown function.
 
     0.776
SFF67539.1
Hypothetical protein.
  
     0.774
SFF98827.1
Protein of unknown function.
 
     0.768
SFE89059.1
Protein of unknown function.
 
     0.757
SFF74721.1
Peroxiredoxin Q/BCP.
  
  
  0.746
SFF85932.1
S-adenosyl methyltransferase.
 
     0.746
Your Current Organism:
Actinoplanes philippinensis
NCBI taxonomy Id: 35752
Other names: A. philippinensis, ATCC 12427, DSM 43019, IFO 13878, JCM 3001, NBRC 13878, NRRL 2506, VKM Ac-842
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